A system and method for reconditioning a fuel cell stack to recover stack voltage loss. The method includes first operating the fuel cell stack in a wet condition where the humidity level in the stack is above 100% to provide liquid water at the cell electrodes. The method then applies a low voltage potential to the stack that causes contaminants to be released from the catalyst surface of the cell electrodes. This step can include starving the cathode side of oxygen for a limited period of time. The method then causes water to flow through the stack so that the contaminants are flushed out of the stack. The process can be performed during vehicle operation where small amounts of voltage would be recovered or during vehicle service where a relatively large amount of voltage could be recovered.