A method for allocating a resource in a serving base station (BS) in a cooperative communication system is provided. The method includes detecting a base station identifier (BSID) of the serving BS and a BSID of each of other serving BSs included in the cooperative communication system; determining an available resource which the serving BS will use and an available resource which each of other serving BSs will use based on the BSID of the serving BS and the BSID of each of the other serving BSs; and transmitting information on the determined available resources to cooperative communication cell member BSs which the serving BS manages.