A control method of a fan rotation speed, which controls the operation of a fan set including fans connected in series, is disclosed. The control method includes the steps of acquiring a control factor; judging whether the control factor is less than a first threshold value; executing a first control procedure when the control factor is less than the first threshold value; judging whether the control factor is greater than a second threshold value when the control factor is greater than the first threshold; executing a second control procedure when the control factor is greater than the second threshold value; and executing a third control procedure when the control factor is less than the second threshold value.