A Fiber (Fiber) Channel (FC) switch and related methods are provided for merging FC fabrics. During a merger process of two separate FC fabrics, a principal switch in a merged FC fabric allocates a domain identifier (ID) to each switch in the merged FC fabric. The principal switch is configured to build a complete domain ID list that identifies the domain IDs for all switches in the merged FC fabric. After the complete domain ID list is generated, the principal switch transmits a message to all switches in the merged FC fabric, the message including the complete domain ID list.