A header box, a furnace and a blocked condensation protection system are disclosed herein. In one embodiment, the header box includes: (1) a first channel having a first channel supply port positioned to be in fluid communication with an inlet of a combustion air blower and a first pressure port couplable to a first input of a pressure sensing device, the combustion air blower and the pressure sensing device associated with the cold end header box and (2) a second channel having a second channel supply port positioned to be in fluid communication with the inlet of the combustion air blower, a second pressure port couplable to a second input of the pressure sensing device and a pressure reference inlet, the second channel in fluid communication with the first channel and configured to have about a same pressure as the first channel when the pressure reference inlet is blocked.