According to certain aspects, an information management cell can include a failover storage manager configured to: instruct a secondary copy application to perform a secondary copy operation in which primary data generated by at least one client computing device is stored as a secondary copy in a second secondary copy file format different than a first secondary copy file format; and subsequent to reestablishment of connectivity to a main storage manager, restore the secondary copy stored in the second secondary copy file format to obtain restored data that is no longer in the second secondary copy file format; and can include at least one secondary storage computing device configured to, subsequent to the restore of the secondary copy, and at the direction of the main storage manager, conduct the restored data to a secondary storage device(s) to create a secondary copy in the first secondary copy file format.