In some embodiments, an apparatus includes a management module configured to assign a unique set of identifiers to each network control entity from a set of network control entities. As a result, a network control entity from the set of network control entities can assign an identifier from its unique set of identifiers to a port in response to that network control entity receiving a login request from the port. The set of network control entities is associated with a distributed multi-stage switch. The management module is also configured to store a zone set database associated with the distributed multi-stage switch. The management module is configured to send an instance of an active zone set stored within the zone set database to each network control entity from the set of network control entities such that each network control entity can enforce the active zone set.