A virtual-machine-based system provides a mechanism to implement application file I/O operations of protected data by implementing the I/O operations semantics in a shim layer with memory-mapped regions. The semantics of these I/O operations are emulated in a shim layer with memory-mapped regions by using a mapping between a process' address space and a file or shared memory object. Data that is protected from viewing by a guest OS running in a virtual machine may nonetheless be accessed by the process.