Embodiments of the present invention provide a method, system and computer program product for dynamic selection of a runtime classloader for a generated class file. In an embodiment of the invention, a method for dynamic selection of a runtime classloader for a generated class file is provided. The method includes extracting meta-data from a program object directed for execution in an application server and determining from the meta-data a container identity for a container in which the program object had been compiled. The method also includes selecting a container according to the meta-data. Finally, the method includes classloading the program object in the selected container.