The present invention relates to a process for separating isomers by simulated moving bed (SMB) adsorption, comprising separating the raw materials comprising isomers by SMB adsorption, said SMB comprising many adsorption beds each of which is equipped with grids, each of the grids being equipped with the feedstock inlet and outlet pipeline of the bed, the feedstock charged into and discharged from SMB at least comprising feedstocks, desorbent, extract, and raffinate, the extract being enriched with the target product, characterized in that the extract is used as a flushing liquid and respectively charged to first or second bed at the upstream of the feedstock charging position and to one of second to fourth beds at the downstream of the extract withdrawing position. Such process is used for separation of C8 aromatic isomers by adsorption, and can improve the capacity of the device while effectively increasing the purity of the target product separated by adsorption.