A fuel cell system includes: a power supply circuit including a fuel cell and a secondary battery; an oxidant gas supply flow passage; a pump; and a control unit configured to drive the pump and dilute hydrogen retained in an cathode. The control unit is configured to stop supplying an oxidant gas to the cathode by stopping an operation of the pump such that dilution of the hydrogen retained in the cathode is stopped, while the fuel cell vehicle remains stationary after a starter switch of the fuel cell vehicle is switched from an off state to an on state, or while a load required of the power supply circuit remains smaller than a predetermined value after the starter switch of the fuel cell vehicle is switched from the off state to the on state.