The invention discloses a control method of an open winding permanent magnet synchronous motor system of a hybrid inverter. The control method comprises the following steps: after acquiring voltage and current of a three-phase stator of a motor, performing three-phase/two-phase static coordinate transformation to obtain voltage and current under a two-phase static coordinate system, thereby obtaining actual feedback values of electromagnetic torque and stator flux linkage; obtaining an initial given value of the electromagnetic torque through a PI (Proportional Integral) controller so as to obtain given values of the electromagnetic torque and the stator flux linkage; then combining output of a capacitor voltage PI controller to obtain final given voltage vectors of two inverters; finally generating a switching signal of the inverters through space vector pulse width modulation; and triggering a switching device of the hybrid inverter to realize direct torque control of the open winding permanent magnet synchronous motor. According to the control method, wide-range operation of low, medium and high speed of the open winding permanent magnet synchronous motor is realized, the electromagnetic torque in a motor acceleration process is increased, the voltage utilization rate of a direct current voltage source is improved, and high-speed constant-power operation of the permanent magnet synchronous motor is guaranteed.