The invention discloses a configuration method of microgrid protection. The configuration method comprises the following steps that 1), grid connection point protection is conducted on grid connection points of a microgrid; 2), a microgrid protection mode is selected according to importance of the microgrid; 3), the inside of the microgrid is protected according to the selected microgrid protection mode. According to the configuration method of microgrid protection, the grid connection point protection is conducted on the grid connection points, a protective device, a fuse and other protective devices are selected according to the condition inside the microgrid, the microgrid is matched with the protective devices to achieve microgrid protection rapidly, the requirement for a power distribution system to which the microgrid has access is met, protective orderliness is clear, rapidness and convenience are achieved, and a good application prospect is achieved.