A variable reluctance linear motor has a stator and an armature mounted so as to be movable along the length of the stator. Armature bearings are mounted to the armature via mechanical vibration dampers and contact the stator so that vibrations in the stator are transmitted to the bearings and dissipated in said vibration dampers. A sensor is mounted to the armature for obtaining position data for the armature with respect to the stator. A controller then calculates the phase currents for the motor phases based on the position data and a desired force value. The phase currents are calculated to maintain a minimum normal force between the armature and said stator, thereby further reducing vibrations. A conditional filter is applied when armature is within a predetermined distance from a desired location. The conditional filter, after a time delay, clamps the velocity feedback to a predetermined range and simultaneously reduces the velocity loop gain.