Embodiments described herein are directed to a file system driven RAID rebuild technique. A layered file system may organize storage of data as segments spanning one or more sets of storage devices, such as solid state drives (SSDs), of a storage array, wherein each set of SSDs may form a RAID group configured to provide data redundancy for a segment. The file system may then drive (i.e., initiate) rebuild of a RAID configuration of the SSDs on a segment-by-segment basis in response to cleaning of the segment (i.e., segment cleaning). Each segment may include one or more RAID stripes that provide a level of data redundancy (e.g., single parity RAID 5 or double parity RAID 6) as well as RAID organization (i.e., distribution of data and parity) for the segment. Notably, the level of data redundancy and RAID organization may differ among the segments of the array.