A method and apparatus for performing autonomous denial for dual connectivity in a wireless communication system is provided. A user equipment (UE) receives an autonomous denial rate from a network, and applies the received autonomous denial rate to at least one of a master cell group (MCG) or a secondary cell group (SCG). The UE is connected to both a master evolved NodeB (MeNB), associated with the MCG, and a secondary eNB (SeNB), associated with the SCG, in dual connectivity.