A control method for a hydrogen filling system is provided. A hydrogen filling system (S) includes a vehicle (V) that sends unique information (V, MC) of the hydrogen tank and detected values (T, P) of sensors, and a station (9) that determines a filling mode based on this information (V, MC, P, T), and fills hydrogen to the tank in this determined mode. A station ECU (95) calculates predicted values (T′, P′) of the temperature and pressure inside of the hydrogen tank during filling of hydrogen based on the unique information (V, MC), continuously confirms whether the detected values (T, P) of the sensors and the predicted values (T′, P′) match while filling fuel, and in the case of an inconsistency between the detected values and predicted values being confirmed, interrupts filling of fuel in the filling mode determined based on the unique information.