An analog front end system can include a filter bypass switch connected in a boot-strapped configuration to pull a control terminal of the filter bypass switch above or below a supply voltage. Using bootstrapped switches can allow both the charge injection and capacitive coupling of the bypass switches of a differential anti-alias filter (AAF) to be common mode. A differential input signal of the ADC is not affected by the charge injection and capacitive coupling of the bypass switches in the AAF filter to a first order.