A method for controlling a variable production line using a skid-type variable workbench and an apparatus for the same. According to the method, a process group including multiple variable workbenches may be organized based on a design, each of the multiple variable workbenches may be mounted on an upper part of a skid board, the skid board may be loaded on a powered line that moves at a regular speed in a fixed direction, the skid board may be moved in consideration of a position of a worker responsible for each process and a work state of the process group, and movement of a target variable workbench may be stopped by removing a skid board, on which the target variable workbench corresponding to an unload instruction in the process group is mounted, from the powered line when the unload instruction is input by a worker.