A multi-die memory apparatus and identification method thereof are provided. The identification method includes: sending an identification initial command and a first start command to a plurality of memory devices by a controller for starting a first identification period; respectively generating a plurality of first target numbers by the memory devices; respectively performing first counting actions and comparing a plurality of first counting numbers with the first target numbers by a plurality of un-identified memory devices to set a first time-up memory device of the memory devices; and, setting an identification code of the first time-up memory device of the un-identified memory devices to be a first value.