A Toffoli magic state to be injected in preparation of a Toffoli gate may be prepared using a bottom-up approach. In the bottom-up approach, computational basis states are prepared in a fault tolerant manner using a STOP algorithm. The computational basis states are further used to prepare the Toffoli magic state. The STOP algorithm tracks syndrome outcomes and can be used to determine when to stop repeating syndrome measurements such that faults are guaranteed to be below a threshold level. Also, the STOP algorithm may be used in growing repetition code from a first code distance to a second code distance, such as for use in the computational basis states.