A signal generator can control phase relationship between output signals of the channels without stopping clocks provided to the channels to enable the circuit operation fast. First and second channels 20 and 22 have signal generation blocks 10 and 12 that have clock phase shift circuits 26 and 28, memories, parallel to serial converters and DACs respectively. A phase comparator 24 compares data reading clocks from the signal generation blocks 10 and 12 to produce a phase difference signal wherein the data reading clocks are used to read waveform data from the memories within the signal generation blocks 10 and 12. A CPU controls the clock phase shift circuits 26 and 28 according to the phase difference signal to shift phases of the clocks provided to the signal generation blocks 10 and 12 and then makes phase relationship between the output signals of the first and second channels 20 and 22 as desired.