In a motor-generator control system for controlling a motor-generator, first and second sets of multiphase windings of a motor-generator are arranged to be spatially shifted in phase from each other. An allocating unit is configured to, upon input of workload request for the motor-generator, determine a first torque to be allocated to the first set of multiphase windings and a second torque to be allocated to the second set of multiphase windings. A resultant torque of the first torque and second torque meets the input workload request for the motor-generator. An energizing unit is configured to energize the first set of multiphase windings to create the first torque and energize the second set of multiphase windings to create the second torque.