The present invention provides a method for generating electronic patent application files, which includes steps of: creating multiple extensible markup language (XML) templates; setting basic requirements of drafted files; mapping the XML templates to chapter headers in the drafted files; analyzing and verifying whether the drafted files meet the basic requirements; parsing contents of the drafted files into corresponding XML templates if the drafted files meet the basic requirements; and generating XML patent application files according to the XML templates. A related system is also disclosed.