An apparatus and a method for composing a subchannel in a wireless communication system are provided. The method includes performing a subband-based permutation on resources for composing a subchannel; selecting one or more subbands as resources for a band selection subchannel from the resources passing through the subband-based permutation; composing the band selection subchannel using at least one of the selected subbands; performing a resource allocation unit based permutation on resources not selected for the band selection subchannel; composing a resource allocation unit based diversity subchannel using subband remained in the selected subbands after the band selection subchannel is composed and at least one of the resource allocation units of the resources passing through the resource allocation unit based permutation; and composing a tone-based diversity subchannel by performing a tone-based permutation on resources remained after the resource allocation unit based diversity subchannel is composed.