According to an embodiment of a controller, a bit string manipulating unit manipulates a bit string of manipulation target data based on a predetermined rule. A special data setting unit generates a magic number based on a special data setting request from a host interface, obtains an error detecting code for the magic number, and sends the magic number and the error detecting code as manipulation target data to the bit string manipulating unit to obtain a manipulated manipulation target data. The special data setting unit also extracts logical block address information from the special data setting request, and instructs an access unit to write the magic number in the manipulated manipulation target data to a user data storage area and to write the error detecting code in the manipulated manipulation target data to a redundant area in a storage area located by the logical block address information.