A vehicle includes an engine, first clutch, transmission, and controller. The transmission includes a gearbox, position sensors, and a fluid circuit. The gearbox contains a second clutch. The fluid circuit includes a pump and a flow control solenoid valve. The controller opens the valve via flow control signals to allow fluid to pass into or from the particular clutch it feeds. The controller executes steps of a method to determine an actual flow rate through the valve as the clutch moves, and also calculates a compensation scale factor as a ratio of the commanded and actual flow rates. The controller modifies the flow control signals in a subsequent clutch actuation using the compensation scale factor, such as by multiplying a commanded flow rate corresponding to the flow control signals by the compensation scale factor. A system includes rotatable members connected by a clutch, the controller, valve, and position sensor.