Methods and an apparatus for processing fuselage sections. Measurements of a first fuselage section are generated using a scanning system. The scanning system includes a first scanner and a second scanner. The first scanner generates measurements of a first portion of the first fuselage section and the second scanner generates measurements of a second portion of the first fuselage section. The first fuselage section is held in a cradle system. The measurements of the first portion of the first fuselage section are combined with the measurements of the second portion of the first fuselage section to generate an ensemble of measurements of the first fuselage section. Using the cradle system, one or more of the first fuselage section or a second fuselage section are shaped based on the ensemble of measurements. Using the cradle system, the first fuselage section is joined with the second fuselage section.