An electrochemical cell system and a process for operating the same, the system having at least two fuel electrodes for receiving electrodeposited metal fuel; at least one oxidant electrode spaced apart from the fuel electrode; at least one charging electrode; an ionically conductive medium communicating the electrodes of the electrochemical cell system for conducting ions to support electrochemical reactions at the fuel, oxidant, and charging electrodes; and, one or more controllers configured to operate the cell system in discharging and charging modes and monitor a state of charge for each fuel electrode. The controllers may assign each fuel electrode in a discharging unit having a state-of-charge meeting a predetermined depletion criteria from the discharging unit to the charging unit, and each fuel electrode in the charging unit having a state-of-charge meeting a predetermined loading criteria from the charging unit to the discharging unit.