Disclosed is a polarization sensitive optical coherence tomography apparatus and control method thereof. According to the polarization sensitive optical coherence tomography apparatus and control method thereof of the present invention, the local phase delay value of each layer of a multiple of layers using Jones matrix for a birefringent material having the multiple of layers where each layers optical axis is random based on a polarized signal detected in an optical detector may be calculated. According to the present invention, a skin aging level can be accurately examined by obtaining an accurate accumulated phase delay value for a multiple of layers of birefringent material having a random optical axis.