The invention discloses an apparatus for sewage deep denitrification with high pollutant carrying capacity and low energy consumption and a method for running the same, characterized in that: the apparatus mainly includes a settling tank, an electrodialysis device, a pH adjusting tank, a first chemical storage tank, a biofilters a second chemical storage tank, a redox potential measuring device, a backwash pump, and a clean water tank, wherein the biofilter is provided with, a gas collecting device, an uniform water distributor, a first filter bed, a second filter bed, a third filter bed, and a fourth filter bed sequentially from up to down, a second dosing port is arranged underneath the second filter bed, and the second chemical storage tank is communicated to the second dosing port respectively through a first flow path and a second flow path.