This invention relates to end-to-end transparent clocks and methods of estimating skew in end-to-end transparent clocks. Embodiments of the invention relate to techniques for estimating clock skew between a free-running clock in a transparent clock and a master clock, in particular by using the timing information embedded in timing messages passing through the transparent clock. Further embodiments of the invention set out uses of these estimates to modify the residence times computed by the transparent clock and a synchronization network including such transparent clocks.