A material synthesis apparatus may include a synthesis device configured to perform a synthesis of a material of a target product; a communication interface configured to receive a first synthesis method of the target product, the first synthesis method being calculated by an external apparatus using a previously trained synthesis prediction model; and a processor configured to: determine first commands for synthesizing the target product based on the first synthesis method, schedule an order in which the first commands are executed, and control the synthesis device based on the scheduled order.