The present disclosure provides an analysis device for a detection chip, an analysis system and a method of operating the analysis device. The analysis device includes a loading part, a temperature control part and a signal detection part. The loading part is configured to receive and hold the detection chip in use and is capable of moving the detection chip. The temperature control part includes a heater and a cooler, the heater is configured to heat the detection chip and the cooler is configured to cool the detection chip. The signal detection part includes an optical sensor. The optical sensor is configured to receive light from the detection chip and perform detection according to the light.