A fuel cell apparatus may include a stack, a reformer configured to generate reformed gas, a burner, a water supply tank configured to store cooling water, a burner air blower configured to draw in external air and then to blow the air, a vertex tube configured to convert the air into heated air and cooled air, a three-way valve configured to supply the air from the burner air blower selectively to the vertex tube or the burner, a first heat exchanger configured to exchange heat between the air discharged from the vertex tube and the cooling water, a second heat exchanger configured to exchange heat between the air discharged from the vertex tube and the reformed gas, and a four-way valve configured to supply the heated air and the cooled air to the first and second heat exchangers.