The present disclosure relates to a method and system for verifying end-to-end data integrity during big data transfer, and includes transferring, with a source node, at least one data set to a sink node; verifying, with the sink node, integrity of at least one object comprised in the data set based on a data and layer-aware Bloom filter (DLBF); verifying, with the sink node, integrity of at least one file comprised in the data set based on a two-phase Bloom filter (TPBF); and verifying, by the sink node, integrity of the data set based on the integrity verification of the object and the file, and can be applied to other embodiments.