A multi-echo NMR imaging method of obtaining images separated from each other with respect to two kinds of chemical shifts, typically, a fat image and a water image, includes performing the measurement of an object to be examined through a multi-echo sequence in which phase differences of .theta..sub.1 .noteq.n.pi. and .theta..sub.2 =2n.pi. (n=.+-.1, .+-.2, ---) are respectively produced for first and second echoes between two kinds of spins to be separated from each other, deriving first and second complex images of the object from the first and second echoes, respectively, performing the measurement of a phantom exhibiting one of the chemical shifts through the multi-echo sequence and deriving third and fourth complex images of the phantom, eliminating phase errors due to a static magnetic field inhomogeneity from the first and second images using phase data of the third and fourth images respectively, and eliminating phase error due to a magnetic permeability distribution to the object.