A system for determining depth profiles of concentrations of hazardous elements in soils comprises a neutron source for generating neutrons of a first energy level and irradiating a volume of soil with the neutrons. Nuclear reactions are effected within the soil and gamma radiation is emitted from the soil. The system also includes an array of gamma detectors for detecting gamma radiation emitted from the soil; source electronics for controlling the width of regularly repeated pulses of neutrons generated by the neutron source; detector electronics associated with the gamma detectors for amplifying and digitalizing signals generated by the gamma detectors and storing data representing the digitalized signals; spectral analysis software for analyzing the data and determining the concentrations of selected target elements in the soil; and an acquisition interface module (AIM). The AIM controls the timing of the source and detector electronics such that the neutron source generates neutrons in regularly repeated bursts of a prescribed pulse width and the detectors and detector electronics detect gamma rays during a plurality of time intervals associated with the burst and acquire groups of data. Each group is indicative of a number of gamma rays emitted and their energy levels during a corresponding time interval. The system also includes a mobile platform carrying the neutron source, array of gamma ray detectors and software for determining a depth profile of a target element. Trace elements can also be detected with the disclosed system.