A bus interface circuit for a programmable logic device (PLD) including an interface multiplexer connected between two or more external communication circuits and a configuration memory array. The interface multiplexer coordinates communication between a selected one of the external communication circuits and a packet processor. The packet processor interprets command/data information transmitted in a bit stream from the selected external communication circuit. In a default state, the interface multiplexer connects dual-purpose input/output pins of the PLD to the packet processor. In an alternative state, the interface multiplexer connects a JTAG interface circuit to the packet processor to facilitate configuration operations through the JTAG pins of the PLD.