The present invention provides a method for monitoring for a second gate over etch in a flash memory device. The method includes providing at least one select transistor stack structure in the core area of the substrate and at least one monitor structure in the monitor area of the substrate; determining a thickness of a select gate layer of the at least one monitor structure; and determining if a second gate over etch occurred upon the thickness of the select gate layer of the at least one monitor structure. The select gate layer of the monitor structure is the same select gate layer of the select transistor stack structure. The select gate thickness of the select transistor stack structure may be determined by measuring the thickness at the monitor structure. This measurement is possible at the monitor area because the monitor structures are placed far enough apart to support measuring instruments. With the method in accordance with the present invention, a second gate over etch and its extent can be monitored without destroying the device. The method requires less time than conventional monitoring methods and is also less costly.