There is provided a control system for an internal combustion engine which controls the operation of the engine such that the combustion mode of the engine is switched between a stratified combustion mode and a homogeneous combustion mode, and torque generated by the engines is controlled based on a desired torque. The control system has an ECU which calculates a required torque based on results of detection by a crack angle position sensor and an accelerator pedal sensor, and determines a combustion mode according to the required torque. Further, the ECU smoothes the required torque in dependence on the combustion mode, to thereby calculate a smoothed required torque. Then, ECU sets the desired torque based on the smoothed required torque.