A method and apparatus control a power converter (20) of a motor drive system. The power converter (20) is controlled during a first operating mode by applying a current control scheme, which sets power converter commands to control active and reactive current components flowing from the power converter (20) to the motor (30) to achieve desired motor speed; and a fault protection scheme is executed during a second operating mode. The fault protection scheme generates power converter commands to reduce the active current component flowing from the power converter (20) to the motor (30) is substantially zero. The first operating mode will be resumed upon receiving the restart command if the motor speed is above a pre-set shutdown threshold.