An apparatus for determining the amount of skew to be injected into a high-speed data communications system of including a plurality of lanes having a data bus per lane, relative to a reference lane, for system skew compensation. By knowing the relative amount of skew that each lane requires for alignment, an appropriate amount of skew can be injected on each lane to provide alignment and thus compliancy with the SFI-5 and SxI-5 standards, in terms of data skew specifications. The relative skew amounts for each transmitting lane are determined using a methodology involving internal loopback and characteristics from a connected communications element to the chip receive path.