Provided are an ARQ apparatus and method for a multihop system in a broadband wireless access communication system. The ARQ method of a relay includes determining if the relay successfully receives specific data from a source and transmitting the specific data to a destination; receiving feedback data from the destination and determining if the destination successfully receives the specific data; generating feedback data including data indicating if the relay and the destination successfully receive the specific data, and outputting the feedback data to the source; and retransmitting the specific data, when the relay successfully receives the specific data but the destination fails to receive the specific data. Accordingly, when the MH-BTS successfully receives the data from the source but the destination fails to receive the data, the source does not retransmit same data to the MH-BTS.