A vehicle control system controls vibrations that are generated at a plurality of portions of a vehicle. An engine/drive system ECU and a brake system ECU store the same vehicle vibration model that is separated into a vehicle body vibration model, a chassis vibration model and a tire vibration model, respectively. The engine/drive system ECU controls the suppression of the vehicle body vibrations that are estimated from the vehicle vibration model and the brake system ECU controls the suppression of the chassis vibrations and the tire vibrations. Accordingly, it is easy to execute control for suppressing the respective vibrations.