A system and method for autonomously scanning a sensor panel device, such as a multi-touch panel, is disclosed. In one embodiment, the system and method disables a sensor panel processor after a first predetermined amount of time has elapsed without the sensor panel device sensing any events. One or more system clocks can also be disabled to conserve power. While the processor and one or more system clocks are disabled, the sensor panel device can periodically autonomously scan the sensor panel for touch activity. Accordingly, if one or more results from the autonomous scans exceed a threshold, the sensor panel device re-enables the processor and one or more clocks to actively scan the sensor panel. If the threshold is not exceeded, then the sensor panel device continues to periodically autonomously scan the sensor panel without intervention from the processor. Furthermore, the sensor panel device can periodically perform calibration functions to account for any drift that may be present in the system.