In a variable valve unit provided with a variable valve mechanism that varies opening characteristics of an engine valve by rotary motion of a control shaft, an actuator that generates a rotary motion of the control shaft, a stopper restricting the rotary motion of the control shaft, and an angle sensor capable of outputting signals corresponding to angle positions of the control shaft, when the signal of the angle sensor at an angle position where the rotation of the control shaft is restricted by the stopper are learned, the actuator is controlled such that the control shaft is pressed against the stopper, after which drive torque of the actuator is reduced and with the drive torque reduced, signals of the then-angle sensor are stored.