A fuel cell system has a purge valve that adjusts the amount of nitrogen in a hydrogen circulation channel and a fuel electrode to be discharged through a discharge channel. A purge rate correcting unit variably sets a target control value of the nitrogen content in the hydrogen circulation channel and the fuel electrode by taking into account whether a driving mode is set in a normal power generation mode or an idle mode. An opening of the purge valve is controlled on the basis of the target control value.