A system for determining the concentration of hydrogen in an anode sub-system of a fuel cell system. The fuel cell system includes at least one fuel cell, an anode inlet, an anode outlet, an anode recirculation line, a source of hydrogen gas and an injector for injecting the hydrogen gas. First and second acoustic sensors are provided in the anode recirculation line and are spaced a known distance from each other. A controller that is responsive to the output signals from the first and second acoustic sensors determines the concentration of hydrogen gas in the anode recirculation line based on the time between when the controller receives the sensor signal from the first sensor and receives the sensor signal from the second sensor.