An air conditioning system having a cooling mode and a free-cooling mode is provided. The system includes a refrigeration circuit, two pressure sensors, a controller, and a pump-protection sequence resident on the controller. The refrigeration circuit includes a compressor and a pump. The first pressure sensor is at an inlet of the pump, while the second pressure sensor is at an outlet of the pump. The controller selectively operates in the cooling mode by circulating and compressing a refrigerant through the refrigeration circuit via the compressor or operates in the free-cooling mode by circulating the refrigerant through the refrigeration circuit via the pump: The pump-protection sequence turns the pump to an off state based at least upon a differential pressure determined by the controller from pressures detected by the first and second pressure sensors.